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ICSB 2007 Welcome to the Eighth International Conference on Systems Biology
Long Beach, California October 1-6, 2007
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Abstract Submission Tutorials WorkshopsCommitteesPosters    Posters By Topic:
A. RTK Systems Biology
B. Morphogenesis
C. Synthetic Biology
D. Mathematical Frontiers
E. Technological Froniters
F. Regulatory Systems
G. Systems Bioinformatics: Tools
H. Systems Bioinformatics: Analysis
I. Systems Biomedicine
J. Multiscale Networks
   Posters By Author
   Submission Call (archive)
LinksFAQ & InformationSponsors & HostsProceedings Journal Articles
H. Systems Bioinformatics: Analysis

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H01. Dynamic modes in biological systems: Why should a biologist care?
Noriko Hiroi (EMBL-European Bioinformatics Institute (EBI), UK)

H02. Inferring Genetic Networks via Nonlinear Models and Optimization Alogrithms
Chih Lee (Institute of Statistical Science, Academia Sinica)

H03. Predicting Gene Function in Yeast through Adaptive Weighting of Multi-Source Information
Shubhra S. Ray (Center for Soft Computing Research, Indian Statistical Institute, Kolkata, India)

H05. Simultaneous gene network and mode of action inference with mNIr
Diego di Bernardo (TIGEM - Napoli, Italy)

H06. Computationally Searching the Genome for Novel JNK Substrates
Thomas Whisenant (Developmental and Cell Biology Department, UCI)

H07. Model-based approach for analysis of transcriptome perturbation reveals Ewing oncogene interaction network
Gautier Stoll (Service bioinformatique, Institut Curie, Paris, France)

H08. A new method for inferring rate coefficients from experimental time-consecutive measurements of reactant concentrations
Alida Palmisano (The Microsoft Research - University of Trento Centre for Computational and Systems Biology (Italy))

H09. Geometricity of Residue Interaction Graphs
Tijana Milenkovic (Department of Computer Science, University of California, Irvine)

H10. A Strategy to Analyze Temporal Bottom-up Proteomics Data
Xiuxia Du (Fundamental Science Division, Pacific Northwest National Laboratory)

H11. Predicting the binding specificity of peptide binding domains using structural information and the FoldX algorithm
Pedro Beltrao (European Molecular Biology Laboratory)

H12. Signaling Pathways in Multiple Organ Failure
Mary F. McGuire (University of Texas School of Health Information Sciences, Houston)

H13. Mathematical modeling of liver regeneration after intoxication with CCl4
Stefan Hoehme (Interdisciplinary Centre for Bioinformatics, University of Leipzig, Leipzig, Germany)

H14. Prediction of Functional Associated Proteins Using Topological Similarity in Protein-Protein Interaction Network
Yu-Wei Chiu (Institute of Biomedical Informatics, National Yang-Ming University)

H15. An Essential Core of Protein-Protein Interaction Network in Escherichia coli
Chen-Ching Lin (Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan)

H16. Characterization of microRNA-Regulated Protein-Protein Interaction Network
Chun-Wei Hsu (Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan)

H17. Predicting synthetic genetic interactions in yeast through machine-learning analysis of protein interaction data
Sri R. Paladugu (Keck Graduate Institute of Applied Life Sciences, Claremont)

H18. Annotating Genes with Unknown Function by a Systems Approach
Frank Emmert-Streib (Department of Biostatistics, Department of Genome Sciences, University of Washington, Seattle)

H19. Large-Scale Reconstruction and Analysis of Growth Environments
Elhanan Borenstein (Department of Biological Sciences, Stanford University, Stanford and Santa Fe Institute, Santa Fe)

H20. Exploring the Concentration Space of Genome Scale Metabolic Networks
Jan Schellenberger (Department of Bioinformatics, University of California, San Diego)

H21. In Silico Determination of Stress-Activated Metabolic Networks in Medicago truncatula
Revonda Pokrzywa (Virginia Bioinformatics Institute, Virginia Tech, Blacksburg)

H22. Regulatory Circuits of MicroRNAs and Transcription Factors in Plant
Xuefeng Zhou (Department of Computer Science, Washington University, Saint Louis, USA)

H23. Classification and structural analysis of coronavirus papain-like proteases based on the active site residues of SARS-CoV-PLpro
Rima Chaudhuri (Center for Pharmaceutical Biotechnology and Dept. of Bioengineering/Bioinformatics Program, University of Illinois at Chicago)

H24. Computational Modelling of Dopamine and Glutamate Signal Integration and ERK-mediated neuroadaptation
Lu Li (Computational Neurobiology, European Bioinformatics Institute, Cambridge, UK)

H25. GPCR signaling architecture in mammalian immune cells
Natalia Polouliakh (Fundamental Research Lab., Sony CSL, Tokyo, Japan)

H26. Genetic Networks Show Strong Differential Dynamical Properties
Hao Xiong (Department of computer Science, Texas A&M University)

H27. Transcriptional Program of the Cell Cycle: High Resolution Timing
Maga Rowicka (University of Texas Southwestern Medical Center)

H28. Comparative analysis of amino acid usage of the Connexin super family in human and mouse
Anusua Paul (Bioinformatics group, PDSIT, Bengal Engineering and Science University, Shibpur, Howrah,West Bengal,India)

H29. Fitness Profiles Identify Enzyme Capacities
Laurence Yang (Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, ON M5S 3E5, Canada)

H30. Systems biology-defined NF-kappaB regulons, interacting signal pathways and networks are implicated in the malignant phenotype of head and neck cancer
Bin Yan (NIDCD, NIH)

H31. Gene expression profiles in Saccharomyces cerevisiae strongly reflect energetic costs of gene products
Armindo Salvador (Center for Neuroscience and Cell Biology – University of Coimbra, Coimbra, Portugal)

H32. Bioinformatics analysis of protein domains involved in signal transducer activity in human and mouse
Satabdi Basu (Department of Bioinformatics, Purabi Das School of Information Technology, Bengal Engineering and Science University, Shibpur, Howrah-711 103,)

H33. Modeling PDC1 and PDC5 expression as a function of thiamine availability in yeast S. cerevisiae
Abraham (Avi) Ericsson (Cell and molecular biology, Göteborgs University, Göteborg, Sweden)

H34. Algebraic Method for the Analysis of Signaling Crosstalk
Shinichi Kikuchi (Institute for Advanced Biosciences, Keio University)

H35. Transcriptional regulatory networks in neuronal regeneration
Geert Geeven (Department of Mathematics, VU University, Amsterdam, the Netherlands)

H36. Elucidating compartmentalized flux direction patterns in yeast
Anne Kuemmel (Institute of Molecular Systems Biology, ETH Zurich, Zurich)

H37. Identification of the in silico targets using the metabolite availability
Tae Yong Kim (Center for Systems and Synthetic Biotechnology, Institute for the BioCentury; Metabolic and Biomolecular Engineering National Research Laboratory, BioProcess Engineering Research Center; Department of Chemical and Biomolecular Engineering (BK21 Program), KAIST)

H38. Global Gene Expression Profiling in Neonatal Rat Myocardium in Response to the Anti-diabetic Drug Rosiglitazone
Chao-Jen Wong (Computational Science Research Center, San Diego State University)

H39. Stress-Induced Post-Transcriptional Regulation in Yeast
Alexandra Jauhiainen (Mathematical Sciences, Chalmers University of Technology , Gothenburg, Sweden)

H40. Extending the predictive potential of metabolic genome-scale reconstructions by accounting for the transcriptional and translational network
Aarash Bordbar (Bioengineering Department, University of California, San Diego, La Jolla, CA, USA)

H41. Active Modules and Relevance Networks during the cell cycle in HeLa cells
Ana CQ Simoes (Programa de Pós-Graduação Interunidades em Bioinformática, Universidade de São Paulo, Brazil)

H42. Identification of genes with common differential expression pattern across different metastatic microarray data
Lam C. Tsoi (Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina)

H43. Computational Analysis of the Redox Stress Response in Organisms
Thanura R Elvitigala (Department of Electrical and Systems Engineering, Washington University, St.Louis, MO 63130)

H44. Effects of Tsr–CheBp and CheA–CheYp affinity in bacterial chemotaxis
Yuri Matsuzaki (Institute for Advanced Biosciences, Keio University, Fujisawa, Japan)

H45. Transcriptional profiling of potential regulatory factors modulating defense mechanisms in soybean under P. sojae infection
LaChelle Waller (Department of Genetics Bioinformatics and Computational Biology, Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University)

H46. Dynamics of splicing during the yeast cell cycle
Agnieszka S. Juncker (Center for Biological Sequence Analysis, BioCentrum-DTU, Lyngby, Denmark)

H47. Comparative Genome Content Analysis with Respect to Basic Microbial Phenotypes by Class Association Rule Mining
Makio Tamura (Biology, Atmosphere, Chemistry, and Earth Division, Lawrence Livermore National Laboratory)

H48. Dynamic Pathway Modeling of DNA Damage Response System and Parameter Estimation
Li Zhang (Computer Science Department,Donald Bren School of Information and Computer Sciences,University of California,Irvine,California,U.S.A.)

H50. Meta-analysis of breast cancer microarray data: Reliable identification of up- and down-regulated genes
Yuriy V. Kondrakhin (Institute of Systems Biology, Novosibirsk, Russia; Design Technological Institute of Digital Techniques SB RAS, Novosibirsk, Russia)

H51. Network Motifs Profile of Proteins Contact Map: A Novel Pattern Recognition Tool for Fold Prediction
Ofer Rahat (Biochemistry Department, Weizmann Inst. of Science, Rehovot, Israel )

H52. Comparison of insulin signaling pathways among 4 species and 3 tissues of mouse
Noriko Hiroi (EMBL-EBI)

H53. Quality Assessment of Microarray Data and Optimal Filtering Criteria
Takashi Kido (Stanford University)

H54. HGT and innovation of Genome Systems Complexity: Where do the selective pressures originate from?
Torbjörn J. Karfunkel (Department of Computing Science, Chalmers University of Technology, Gothenburg, Sweden)

H55. The Conservation and Evolutionary Modularity of Metabolism
John Parkinson (Hospital for Sick Children, Toronto)

H56. Genomic Imprint of the Interactome: Universality of Genome Evolution
Jonathan Miller (Human Genome Sequencing Center, Baylor College of Medicine, Houston)


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