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ICSB 2007
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Monday
October
1
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Tuesday
October 2
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Wednesday
October 3
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Thursday
October 4
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Friday
October 5
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Saturday
October 6 |
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Tutorials & Opening
Reception
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Conference
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Workshops
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| 8:00 a.m. |
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| 8:30
- 8:45 a.m. |
| Introduction
to ICSB 2007
Location: Grand Ballroom |
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| 8:15 - 8:30
a.m. |
| Introduction to Day 2
Location: Grand Ballroom |
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| 8:45
- 9:45 a.m. |
| Keynote Speaker Claire
Tomlin UC Berkeley
A Systems Biology Approach to Decoding Cell
Polarity in Flies
Location: Grand Ballroom |
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| 8:30 - 9:45
a.m. |
| ISSB meeting
Location: Grand Ballroom |
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| 8:30 - 8:45
a.m. |
| Introduction to Day 3
Location: Grand Ballroom |
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9:00
a.m.
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| 9
a.m. - Noon |
| Morning
Tutorials Location: 200-series rooms (Ballroom level)
AM1. What is Systems Biology? A Survey of Systems Biology Research Room 204
AM2. Mathematical Tools for the Analysis of Biochemical Network Dynamics Room 201A
AM3. Stochastic Gene Expression in Systems Biology Room 201B
AM4. Computational analyses across the BioCyc collection of Pathway/ Genome Databases Room 202A
AM5. Advanced Model Analysis with COPASI Room 202B
AM6. Cancelled
AM7. Drawing, annotating and analyzing biological pathways with Edinburgh Pathway Editor Room 203A
AM8. The Systems Biology Workbench Room 203B
AM9. PySCeS: the Python Simulator for Cellular Systems Room 203C
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| 8:45
- 9:45 a.m. |
| Keynote Speaker Eric Weischaus Princeton
Positional Information and Morphogen Gradients
in Drosophila: New Data and New Unanswered Questions
Location: Grand Ballroom |
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| 9
a.m. - Noon |
| Workshops
W1. Systems Biology in Medicine URL: click here Location: Long Beach Convention Center, Room 201
W2. Frontiers in Application of Systems Modeling and Simulation URL: click here Location: Hyatt Hotel, Seaview B
W3. The Twelfth Systems Biology Markup Language (SBML) Forum Meeting URL: click here Location: Hyatt Hotel, Seaview C
W4. Gene Co-Expression Network Analysis and its Applications in Systems Biology URL: click here Location: Hyatt Hotel, Seaview A |
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| 9
a.m. - Noon |
| Workshops
W2. Frontiers in Application of Systems Modeling and SimulationURL: click here Location: Hyatt Hotel, Seaview B
W3. The Twelfth Systems Biology Markup Language (SBML) Forum Meeting URL: click here Location: Hyatt Hotel, Seaview C |
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| 10:00
a.m. |
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| 10:15
-12:15 p.m. |
| Session 1:
Morphogenesis
Naama Barkai Weizmann Institute
Julian Lewis CRUK,
London, UK
Notch Signalling and the Somite Segmentation Clock:
Mathematical Modelling and Experimental Validation
Henrik Jönsson Lund,
Sweden
Modeling and Live Confocal Imaging of Plant Shoot Development
Jasmin Fisher
Predictive Modeling of Signaling Crosstalk during C. elegans Vulval Development
Location: Grand Ballroom |
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| 10:15
-12:15 p.m. |
| Session 3: Network Structure and Regulation
Daphne Koller Stanford
Activity Motifs: Statistical Analysis of the Dynamics of
Biological Networks
Jonathan Weissman UCSF
Alex van Oudenaarden MIT
The Frequency Dependence and Perfect Adaptation of Osmosensing
Sohyoung Kim
Fine Tuning of p53-Mdm2-MdmX Network by MdmX during DNA Damage Response
Location: Grand Ballroom |
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| 10:15
-12:15 p.m. |
| Session 6: Mathematical Frontiers
Linda Petzold UCSB
Discrete Stochastic Simulation for Biochemical Systems - State
of the Art
Oleg Igoshin Rice University
Patterns and Signaling Networks in MyxobacterialDevelopment
Eduardo Sontag Rutgers
Qualitative/ Quantitative Analysis of Biomolecular Network
Dynamics
Pablo Iglesias
Information-Theoretic Analysis of Signal Transduction Pathways
Location: Grand Ballroom |
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11:00
a.m.
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Noon
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| 12:15
- 2:00 p.m. |
| Lunch break |
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| 12:15
- 2:00 p.m. |
| Lunch break |
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| 12:15
- 2:00 p.m. |
| Lunch break |
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1:00
p.m.
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2:00
p.m.
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| 2:00 - 5:00 p.m. |
Afternoon
Tutorials
Location: 200-series rooms (Ballroom level)
PM1. New Mathematical Methods for Systems Biology Room 204 Sold Out
PM2. Genetic Algorithms and their Application to the Artificial Evolution of Genetic Regulatory Networks Room 201A
PM3. Rule-Based Kinetic Modeling of Signal Transduction Networks Room 201B
PM4. PANTHER Pathway Curation System: An infrastructure for community curation and contribution of biological network knowledge Room 202A
PM5. CellDesigner 4.0: A Process Diagram Editor for Gene-Regulatory and Biochemical Networks Room 202B
PM6. Inverse Methodologies for Systems Biology: SOSlib, MathSBML and Matlab extensions Room 202C
PM7. Computational Cell Biology with VCell Room 203A
PM8. Formal description and visual modeling of complex biological systems using BioUML workbench and BioUML Network Edition Room 203B
PM9. Accessing and annotating kinetic data for quantitative modeling: The SABIO-RK database Room 203C |
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| 2:00
- 4:00 p.m. |
| Session 2:
Innovative Approaches
Carsten Carlberg NUCSYS: Systems Biology of Nuclear Receptors
Roger Brent Molecular Sciences Institute
Physiology and Genetic Regulation of Cellular Signal Transmission
Pamela Silver Harvard
Medical School
Designing Biological Systems
Alice Ting MIT
Molecular Reporters for Imaging Protein Function in the Living
Cell
Location: Grand Ballroom |
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| 2:00
- 4:00 p.m. |
| Session 4: Systems Bioinformatics
Olga Troyanskaya Princeton
Discovering Novel Biology Through Integration of Computation
and Experiments
Søren Brunak Lyngby,
Denmark
Understanding Interactomes by Data Integration
Andrea Califano
Signalome-Transfactome Networks in Human B Cells
Elhanan Borenstein
Large-Scale Reconstruction and Analysis of Growth Environments
Location: Grand Ballroom A |
| 2:00
- 4:00 p.m. |
| Sponsored
Session: RTK Systems Biology
Dr. Andrea Bertotti University of Turin
Ami Citri
Stanford University
The Architecture of Growth Factor Signaling
Heimo Riedel
West Virginia Univ. School of Medicine
Lucia Wille Understanding IGF Signaling Dynamics through Computational Modeling
Location: Grand Ballroom B |
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| 2:00
- 4:00 p.m. |
| Session 7: Synthetic Biology
Christina Smolke Caltech
A Framework for Programming System Behavior Through Integrated
RNA Devices
Ron Weiss Princeton
Synthetic Biology: From Bacteria to Stem Cells
Sang Yup Lee KAIST,
Korea
Systems Biotechnology for the Enhanced Production of Chemicals
and Materials
Tetsuya Yomo
How Does Phenotypic Fluctuation Facilitate Adaptation and Evolution?
Location: Grand Ballroom A |
| 2:00
- 4:00 p.m. |
| Session 8: Systems Biomedicine
Alexis Borisy CombinatoRx
Synergy Enables Selectivity
Marta Cascante Univ.
of Barcelona
Robust Metabolic Network Adaptation in Multifactorial Disease
Could Become New Targets for Novel Designed Therapies
Tim Buchman Washington
Univ.
Organization and Dynamics in Critical Illness and Critical
Care
Alberto Polleri
Modeling Genetic Circuit Dysregulation in Human Disease
Location: Grand Ballroom B |
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| 2:00 - 5:00 p.m. |
| Workshops
Workshops shown in morning continue into afternoon. |
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| 2:00 - 5:00 p.m. |
| Workshops
Workshops shown in morning continue into afternoon. |
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3:00
p.m.
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4:00
p.m.
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| 4:30 - 6:15
p.m. |
| Panel Discussion 1:
Commercial Job Opportunities (sponsored by AstraZeneca)
Iya Khalil Gene Network Sciences
Christian Siebel Genentech
Didier Scherrer AstraZeneca
Brian Harms Merrimack Pharmaceuticals
Location: Grand Ballroom |
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| 4:30 - 6:15
p.m. |
| Session 5: Student
Session Selected student oral presentations
Joshua Ho The University of Sydney, Australia
Modeling the Evolution of Gene Regulatory Networks
R. Sidney Cox III Caltech
Programming Gene Expression with Combinatorial Promoters
Xiling Shen Stanford
Hybrid Modeling and Robustness Analysis on Caulobacter Cell Cycle Regulation
Brian Munsky UCSB Sensitivity Analysis and Parameter Identification of
Stochastic Gene Regulatory Networks Using Finite State Projection
Techniques
Silvia Santos EMBL Heidelberg
MAPK Network Properties Determine Cell Fate Decision in PC-12 Cells
Thomas Whisenant UCI
Computationally Searching the Genome for Novel JNK Substrates
Location: Grand Ballroom |
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5:00
p.m.
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6:00
p.m.
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| 6:00
p.m. |
Keynote
Speaker Adam P. Arkin
Associate Professor of Bioengineering, University of California, Berkeley, Director, Virtual Institute of Microbial Stress and Survival
Appreciating the Designs of the Blind Watchmaker: How Characterization and Creation are Creating a New Biological Engineering Science
Location: Hyatt, Regency Ballroom ABC |
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7:00
p.m.
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| 7:00
p.m. |
| Opening
Reception
Location: Hyatt, Beacon Ballroom |
|
| 7:00
p.m. |
Banquet
at Aquarium of the Pacific
Speaker
Evelyn Fox Keller
Bringing Systems Biology to Life
Location: Long Beach Aquarium |
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8:00
p.m.
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9:00
p.m.
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| For your convenience, also available is a 1
page schedule (pdf,
52KB). |
